IMMUNOLOGY2026™ Conference Recordings For Attendees-immgenT Resources: Flow panels, analysis tools, and website to use immgenT in your research

immgenT Resources: Flow panels, analysis tools, and website to use immgenT in your research

Video Transcription

Video Summary

Oran presented the Imgen-T resource suite for exploring and integrating T cell single-cell data. He highlighted the Imgen-T website tools, including Gene Skyline for viewing gene expression across clusters, TCR Search for querying TCRs across datasets, and interactive lineage maps for exploring cluster definitions, organ enrichment, and marker genes. He then demonstrated Rosetta2, which displays RNA and surface protein data side by side and supports dataset overview, subset comparison, flow-like gating, and integration with the broader T cell atlas. Finally, he described tRBI, a pipeline for mapping new single-cell RNA-seq T cell datasets onto the Imgen reference using an HPC-based submission workflow, producing annotated outputs, confidence scores, and QC summaries. The talk ended with a Q&A about command-line access, data retention, privacy, and sequencing platform compatibility.

Meta Tag

Date April 16, 2026 5:00 PM - 5:15 PM

Room 151

Session Resource Highlight: immgenT: A Community Reference Atlas for Mouse T Cells

Speaker Odhran Casey

Track Computational and Systems Immunology (COMP)

Year 2026

Keywords

Imgen-T

T cell single-cell data

Gene Skyline

TCR Search

Rosetta2

tRBI pipeline

April 16, 2026 5:00 PM - 5:15 PM

151

Resource Highlight: immgenT: A Community Reference Atlas for Mouse T Cells

Odhran Casey

Computational and Systems Immunology (COMP)

2026